| Course Unit Code | Course Unit Title | Type of Course Unit | Year of Study | Semester | Number of ECTS Credits | | FBT709 | BIOINFORMATICS IN FISH GENETIC | Compulsory | 1 | 1 | 6 |
|
| Level of Course Unit |
| Third Cycle |
| Objectives of the Course |
| Students will develop practical and theorical skills to find, retrieve and analyze the data at the level of DNA, RNA and protein from major bioinformatic databases; develop judgement to evaluate analysis results; elementary knowledge of phylogenetics; basic understanding of protein structures and protein visualization. |
| Name of Lecturer(s) |
| Doç. Dr. Yılmaz ÇİFTCİ |
| Learning Outcomes |
| 1 | know the definition and using fields of bioinformatics | | 2 | know how to utilize internet-based gene banks and computer-supported gene and genomic sequence analysis- editing primer,oligo sequence | | 3 | | | 4 | |
|
| Mode of Delivery |
| Formal Education |
| Prerequisites and co-requisities |
| None |
| Recommended Optional Programme Components |
| None |
| Course Contents |
| A general introduction to key areas of bioinformatics: bioinformatic databases, genomics, DNA and protein sequences, protein structures; theory and practice of the most common computational tools used in bioinformatics and building of phylogenetic trees |
| Weekly Detailed Course Contents |
|
| 1 | Definition and history of bioinformatic | | | | 2 | Sequence data collection and storage | | | | 3 | Sequence formats | | | | 4 | Alignment of sequence pairs | | | | 5 | BLAST | | | | 6 | The introduction and use of data bases | | | | 7 | Multiple sequence alignment | | | | 8 | Mid-term exam | | | | 9 | Entering sequence to gene bank | | | | 10 | Investigation of the database for similar sequences | | | | 11 | Phylogenetic estimates | | | | 12 | Maximum parsimony method | | | | 13 | Maximum parsimony method | | | | 14 | Method of genetic distance | | | | 15 | Maximum likelihood approach | | | | 16 | End-of-term exam | | |
|
| Recommended or Required Reading |
|
| Planned Learning Activities and Teaching Methods |
|
| Assessment Methods and Criteria | |
| SUM | 0 | |
| SUM | 0 | | Yarıyıl (Yıl) İçi Etkinlikleri | 40 | | Yarıyıl (Yıl) Sonu Etkinlikleri | 60 | | SUM | 100 |
| | Language of Instruction | | Turkish | | Work Placement(s) | | None |
|
| Workload Calculation |
|
| Midterm Examination | 1 | 3 | 3 |
| Final Examination | 1 | 3 | 3 |
| Attending Lectures | 14 | 3 | 42 |
| Report Preparation | 2 | 24 | 48 |
| Self Study | 1 | 20 | 20 |
| Individual Study for Homework Problems | 1 | 20 | 20 |
| Individual Study for Mid term Examination | 1 | 20 | 20 |
| Individual Study for Final Examination | 1 | 24 | 24 |
|
| Contribution of Learning Outcomes to Programme Outcomes |
| LO1 | 4 | 3 | 4 | 4 | 5 | 4 | 3 | 4 | 3 | 4 | 5 | 3 | | LO2 | 4 | 5 | 5 | 4 | 5 | 4 | 3 | 4 | 3 | 4 | 5 | 3 | | LO3 | | | | | | | | | | | | | | LO4 | | | | | | | | | | | | |
|
| * Contribution Level : 1 Very low 2 Low 3 Medium 4 High 5 Very High |
|
|
|
|
Ordu University Rectorate Building ,Cumhuriyet Campus , Center / ORDU / TURKEY • Tel: +90 452 226 52 00
|